PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_40732.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 151aa    MW: 16589.6 Da    PI: 6.7989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_40732.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-05123149430
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                               h  +Er+RR+++ +++  L  llP +
  Rsa1.0_40732.1_g00001.1 123 EHVLAERKRRQKLSERLIALSALLPGL 149
                              5889*********************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.724119151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-5119150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-5123149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-4124151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MLDTDEYLID DWESDFPLVP GETTDHQNPV LGSGSESRFI LIPERPTKQL KVNSTSSSSS  60
SSSSSGSLTT PQVISFGAQE PMMNVAETSF NFSNQANMDQ NAGSKRKECG INGGKREPHL  120
LKEHVLAERK RRQKLSERLI ALSALLPGLK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1762482e-64AK176248.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH020), complete cds, clone: RAFL23-14-F04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708387.11e-85PREDICTED: transcription factor NAI1-like isoform X2
RefseqXP_013708386.12e-85PREDICTED: transcription factor NAI1-like isoform X1
RefseqXP_013708385.12e-85PREDICTED: transcription factor NAI1-like isoform X1
SwissprotQ8S3F14e-56BH020_ARATH; Transcription factor NAI1
TrEMBLM4FFQ35e-82M4FFQ3_BRARP; Uncharacterized protein
STRINGBra039927.1-P1e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.16e-56bHLH family protein