PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_29253.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 186aa    MW: 20643.9 Da    PI: 4.6795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_29253.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.3e-19352255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Rsa1.0_29253.1_g00001.1  3 SYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 52
                             6*****888.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-21360IPR016177DNA-binding domain
PROSITE profilePS5103223.617360IPR001471AP2/ERF domain
SMARTSM003801.6E-36366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-31361IPR001471AP2/ERF domain
PfamPF008473.7E-13352IPR001471AP2/ERF domain
CDDcd000183.68E-33462No hitNo description
PRINTSPR003677.7E-11415IPR001471AP2/ERF domain
PRINTSPR003677.7E-112642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
PTSYRGVRKR SWGKWVSEIR EPKKKSRIWL GTYPTAEMAA RAHDVAALAI KGSSGFLNFP  60
ELSGLLPRPV SCSPKDIQAA AAKAAEATWQ EPVIHEKLAE ELSHSELSTA QSSTSSGFVF  120
SSDTSETSST VKESIEETVF DLPDLFTGGL INQNDAFRYY DSTSTWQLYG EDGVFRLEEP  180
FIWLDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-164611573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_29253.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488803.11e-135PREDICTED: ethylene-responsive transcription factor ERF035
SwissprotQ9M2103e-83ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLA0A397YCH91e-101A0A397YCH9_BRACM; Uncharacterized protein
TrEMBLM4CTJ51e-101M4CTJ5_BRARP; Uncharacterized protein
STRINGBra007539.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.12e-77ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]