PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_28876.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 182aa    MW: 20926.6 Da    PI: 4.9147
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_28876.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123156123
                             EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                             y Cp   C k + + + Lk H+++ H
  Rsa1.0_28876.1_g00001.1 31 YACPyeGCEKAYIHEYKLKLHLKReH 56
                             89*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-62554No hitNo description
Gene3DG3DSA:3.30.160.605.7E-102653IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.5333161IPR007087Zinc finger, C2H2
PROSITE patternPS0002803356IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
TPKYTPPAEK ISRTPKTPAT VYGSATSERP YACPYEGCEK AYIHEYKLKL HLKREHPGHL  60
PEENAENPTP NKHELEEGSD QDFYRKHASN GKNQTHNKLQ SRAKPNMRTP PAKARKKGST  120
SSPAKARIAK KPWQVKETYE GEREEEEEDS EETEEDRENV DDGWRFGGNN EEEDDEETED  180
ED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140878.13e-95PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_013702531.13e-95PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L38e-78Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLA0A078F1W33e-95A0A078F1W3_BRANA; BnaA10g05820D protein
TrEMBLM4F3S63e-95M4F3S6_BRARP; Uncharacterized protein
STRINGBra035726.1-P9e-95(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-77C2H2 family protein