PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_28455.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 182aa    MW: 20933.2 Da    PI: 5.1673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_28455.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09149177129
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk 29 
                              +r++h ++Er+RR+++N+ +  Lr+l+P 
  Rsa1.0_28455.1_g00001.1 149 QRMTHIAVERNRRKQMNEHLRVLRSLMPG 177
                              79**************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.47E-8140179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-8147178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-7147182No hitNo description
PROSITE profilePS5088811.82148182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6149177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MPQQHQLSPS GFGATPAFDK MSFADVMQFA DFGPKLALNQ TGNQENQETG MDPVYFLKFP  60
VLNDKIEDHN QTHNLMSQEG GECEGNIGNV FLEEKENQDV ENDNNSVQLR FIGGEEEEER  120
ENKNDTTKEV KSKRKRARTS KTSEEVESQR MTHIAVERNR RKQMNEHLRV LRSLMPGSYV  180
QR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149160RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418808.11e-118hypothetical protein EUTSA_v10002558mg
RefseqXP_009135876.11e-118PREDICTED: transcription factor FAMA isoform X2
RefseqXP_013685447.11e-118PREDICTED: transcription factor FAMA isoform X2
SwissprotQ56YJ81e-101FAMA_ARATH; Transcription factor FAMA
TrEMBLV4L0U01e-118V4L0U0_EUTSA; Uncharacterized protein
STRINGBra001929.1-P1e-117(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55482649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.12e-86bHLH family protein