PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_24580.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 133aa    MW: 15144.5 Da    PI: 10.0861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_24580.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.5e-112672455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                              h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  Rsa1.0_24580.1_g00001.1 26 EHVIAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRLKQLQ 72
                             699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-162088IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.5262271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-82672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-162687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-92776No hitNo description
SMARTSM003531.6E-122877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDQLVRCGTK QKSCSSAKRS PAFAKEHVIA ERKRREKLSE KFIALSALLP GLKKADKITV  60
LDDAISRLKQ LQEQIRKLKE EKEATRHMES MILVKKSKVF FDEKTSLPSS SCSDNEQFDQ  120
PLPQIEAKVA QNE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13035ERKRRE
23136RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603284.12e-73PREDICTED: transcription factor bHLH19-like
RefseqXP_013710501.15e-73PREDICTED: transcription factor bHLH19-like
RefseqXP_013711069.15e-73PREDICTED: transcription factor bHLH19-like
SwissprotQ1PF167e-64BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A078IUB31e-73A0A078IUB3_BRANA; BnaC08g49180D protein
STRINGBra039926.1-P2e-71(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.14e-65bHLH family protein