PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_24109.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20136.2 Da    PI: 9.9425
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_24109.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.31.3e-151050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +i n+s r++t+ kR+  +lKKA+E+ +LC+++v  ii+s+
  Rsa1.0_24109.1_g00001.1 10 FIVNNSSRKTTYKKRKRALLKKAHEIFTLCGINVGPIIYSP 50
                             799************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.119149IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-131051IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTRRKVKLAF IVNNSSRKTT YKKRKRALLK KAHEIFTLCG INVGPIIYSP YDPTPEVWPS  60
VEGMNQVITT FRNLPEIDRH NNMVNQHEFV QQRITKADQL LLMKKKDNKE VNLNEDMYRF  120
LQIGQLTIPA GGHNSPALAR DLNDLGYLID QYINSLNRRI QILEGGSDVE IGESL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAFIVNNSSRKTTYKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_24109.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084929e-76AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444906.11e-107PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-49AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A3P5ZG076e-62A0A3P5ZG07_BRACM; Uncharacterized protein
TrEMBLM4FIU36e-62M4FIU3_BRARP; Uncharacterized protein
STRINGBra041022.1-P1e-62(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-51AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]