PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_22759.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 187aa    MW: 21178.4 Da    PI: 5.4632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_22759.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-1685135255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Rsa1.0_22759.1_g00001.1  85 KYRGVRRRP-WGKFAAEIRDPAK--KGSRVWLGTFESDVDAARAYDCAAFKLRG 135
                              8********.**********954..34**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-3184144IPR001471AP2/ERF domain
PfamPF008471.3E-1185135IPR001471AP2/ERF domain
CDDcd000184.28E-2985143No hitNo description
SMARTSM003808.0E-3685149IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2285144IPR016177DNA-binding domain
PROSITE profilePS5103224.73785143IPR001471AP2/ERF domain
PRINTSPR003673.3E-138697IPR001471AP2/ERF domain
PRINTSPR003673.3E-13125145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MATFEESSDL DDIQKHLFED FMVSDSFMGD FDFDASSVSG LWCIEPVMNQ VPKQEPDSSS  60
AHETDQSVST RKKTKRSQEE EEQRKYRGVR RRPWGKFAAE IRDPAKKGSR VWLGTFESDV  120
DAARAYDCAA FKLRGRKAVL NFPLDAGKYE APANSGRKRK RSDVKEELQR SQSNSSTSLS  180
DGETTCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2884144464ATERF1
3gcc_A7e-2884144464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_22759.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507111e-127AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468394.11e-136PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY053e-91EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A078FLW01e-116A0A078FLW0_BRANA; BnaC02g01530D protein
TrEMBLA0A0D3AI371e-116A0A0D3AI37_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D1K31e-116A0A3P6D1K3_BRAOL; Uncharacterized protein
STRINGBo2g008700.11e-117(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-91ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]