PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_21802.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 189aa    MW: 20577.6 Da    PI: 9.7759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_21802.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13149187244
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 
                              r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L
  Rsa1.0_21802.1_g00001.1 149 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFL 187
                              899*************************9....8999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-14146188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.246147189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-12148187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10149187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-10149187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MMFTASGGGG VERNAVDAAA VASGFTLWDE SGSGNKGQTR KDNNSAGGER AGVATTMGQW  60
PVVEQRSQSL TNNNNPLSGF SSRSSSQGSG LKSQSFMDMI RSAKGTSPDD DLDDDEDFIM  120
KKESSSTSQN HIVDLRVKAS NDPKLNTPRS KHSATEQRRR SKINDRFQML RQLIPNSDQK  180
RDKASFLLE
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_21802.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533131e-117AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466829.11e-126PREDICTED: transcription factor BIM1-like, partial
SwissprotQ9LEZ32e-72BIM1_ARATH; Transcription factor BIM1
TrEMBLM4CP315e-81M4CP31_BRARP; Uncharacterized protein
STRINGBra005969.1-P9e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.34e-70bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]