PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_21802.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 189aa    MW: 20577.6 Da    PI: 9.7759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_21802.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13149187244
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 
                              r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L
  Rsa1.0_21802.1_g00001.1 149 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFL 187
                              899*************************9....8999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-14146188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.246147189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-12148187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10149187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-10149187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MMFTASGGGG VERNAVDAAA VASGFTLWDE SGSGNKGQTR KDNNSAGGER AGVATTMGQW  60
PVVEQRSQSL TNNNNPLSGF SSRSSSQGSG LKSQSFMDMI RSAKGTSPDD DLDDDEDFIM  120
KKESSSTSQN HIVDLRVKAS NDPKLNTPRS KHSATEQRRR SKINDRFQML RQLIPNSDQK  180
RDKASFLLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533131e-117AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131036.12e-83PREDICTED: transcription factor BIM1-like isoform X4
RefseqXP_009131037.12e-84PREDICTED: transcription factor BIM1-like isoform X5
SwissprotQ9LEZ31e-73BIM1_ARATH; Transcription factor BIM1
TrEMBLM4CP311e-82M4CP31_BRARP; Uncharacterized protein
STRINGBra005969.1-P3e-82(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.34e-70bHLH family protein