PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_19367.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 318aa    MW: 36280.9 Da    PI: 4.6875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_19367.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.5e-07193237655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  Rsa1.0_19367.1_g00001.1 193 SIAARERRRRIADKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 237
                              567899*****************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-10179248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.462187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-10190255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-8193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-5193237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-4209240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
DSFTFFFSSG FIIFALSSMD CLSHFFDRDQ PIQLQDCFIP DVDTTNPETD SFFFQSQPQL  60
QYHQPLFQEE APSQTLLELT DLDYLCDQFL PPQETCLPYP KTEIFNQTHD LDSFLPTPKL  120
QKLVSSSYQC HTHNHFSSPN PNFFNCYDQL DLAPEASIFP NFQVPDFPLE FKVGRGDEDR  180
GHDTKKPSLS SQSIAARERR RRIADKTHEL TKLIPGGQKL NTAEMFQAAA KYVKFLQSQV  240
GILQMMQTTT KTHISDAEIE TRVLLGSQAI QEKLSTDEVC LVPCGMVRDL ASEESIWRNP  300
MISGKINKFL SADMSTNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_19367.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466572.10.0PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD01e-133BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A078IRR01e-166A0A078IRR0_BRANA; BnaCnng22590D protein
STRINGBo4g039270.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-125bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]