PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_18971.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 195aa    MW: 21548.4 Da    PI: 6.7678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_18971.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH59.36.5e-1964116155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++ +hn+ Er RR++iNs f+ Lr++lP+ +   +skKls ++++ +A eYI +Lq
  Rsa1.0_18971.1_g00001.1  64 KKLNHNASERGRRKKINSMFSALRSCLPStD---KSKKLSVSATVSQALEYIPELQ 116
                              6789*************************77...*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.32E-1763119No hitNo description
PROSITE profilePS5088815.11663115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1664132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-1664116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-1964135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1469121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MCALVPPLFP NFGWPCGDQG FYVNDDIANT FLDFPLPDLD VDHQNASSER HRTLGLVNNP  60
VLMKKLNHNA SERGRRKKIN SMFSALRSCL PSTDKSKKLS VSATVSQALE YIPELQEQVN  120
MLIKKKDELS FQISGQKDLL NTNQNGNPEK GDTRYASTVS ATRIGETGLM VQISSLQTVK  180
CSFGNLLSGI EEDGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691391.11e-129PREDICTED: transcription factor bHLH100-like
SwissprotQ9ZVB51e-103BH100_ARATH; Transcription factor bHLH100
TrEMBLA0A078FR011e-129A0A078FR01_BRANA; BnaC04g47550D protein
STRINGBra016946.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41240.12e-94basic helix-loop-helix protein 100