PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_18755.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 205aa    MW: 23208.8 Da    PI: 6.1588
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_18755.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.82.4e-072253255
                      AP2 32 slgkfgtaeeAakaaiaarkkleg 55
                             +lg+f t eeAa+a+++a+  l+g
  Rsa1.0_18755.1_g00001.1  2 WLGTFETSEEAARAYDEAACLLRG 25
                             9******************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.181133IPR001471AP2/ERF domain
CDDcd000181.27E-16135No hitNo description
SuperFamilySSF541714.05E-9133IPR016177DNA-binding domain
SMARTSM003801.3E-6139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-14134IPR001471AP2/ERF domain
PfamPF008473.3E-4225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MWLGTFETSE EAARAYDEAA CLLRGSNTRT NFANHFPNNT HLSLKIRNLL HQKQIIKQQQ  60
QQNKPVSSFA EHNINYTSPA TSPTASTTTT LMPFSNNVYR PDSSVILQQE PDSVQLLYSW  120
PLVSELNHQV PLTQRGEEPH GHVSNHKLTD QHLGLAEIER QISASLYAMH GATTYYNNMN  180
AEYPIFDPTD PIWDLPSLSQ LFCPT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_18755.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131751.11e-117PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S12e-96RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLM4CQM91e-115M4CQM9_BRARP; Uncharacterized protein
STRINGBra006518.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-96related to AP2 11
Publications ? help Back to Top
  1. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]