PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_17632.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 201aa    MW: 21770.9 Da    PI: 5.1192
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_17632.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-194797155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  Rsa1.0_17632.1_g00001.1 47 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 97
                             79*****998.**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.99E-2347107No hitNo description
PfamPF008474.4E-134797IPR001471AP2/ERF domain
PROSITE profilePS5103223.28848105IPR001471AP2/ERF domain
SMARTSM003801.4E-3648111IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2248106IPR016177DNA-binding domain
PRINTSPR003676.2E-114960IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3249106IPR001471AP2/ERF domain
PRINTSPR003676.2E-117187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTGSSISSVK QPSTVEVEEE EESQHHHQDQ EDQSHRTNNK KRVRPDPGYR GVRMRTWGKW  60
VSEIREPRKK SRIWLGTFST AEMAARAHDA AALTIKGTSA VLNFPELATC LPRPASSSPR  120
DVQAAAAVAA AMDFSSSAAV AISDSTSTSS SSLSPSSEEA ASSSKAEELS EIVKLPSLET  180
SYDGSWSEFV YVDPEYPPSP P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-19491051572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_17632.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465107.11e-142PREDICTED: ethylene-responsive transcription factor ERF037-like
SwissprotO806541e-69ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A3N6RK585e-80A0A3N6RK58_BRACR; Uncharacterized protein
STRINGXP_010471905.11e-83(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.12e-43ERF family protein