PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14221.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 251aa    MW: 27792.3 Da    PI: 7.4977
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14221.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA43.41.1e-131331662158
                CBFB_NFYA  21 RakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              Ra+ e+     + ++ pylheSRh+hA+rRpRg+gGrF
  Rsa1.0_14221.1_g00002.1 133 RARKEA----YQIQKGPYLHESRHQHAMRRPRGTGGRF 166
                              566665....355789*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115217.245103169IPR001289Nuclear transcription factor Y subunit A
SMARTSM005213.0E-6123169IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-11138166IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MHSKSDVSEV YHHHTSSNGS KSLSNRDESG NKEESLVTTS PQHSGAFDLS SLGGDNSEKS  60
QEPVHPGTTP PLPHPQLVSH AVGWTSSNLY QDPYYAGMMG AYPLAYVPYG GMPHSRMQLP  120
PEMAQEPGTS QGRARKEAYQ IQKGPYLHES RHQHAMRRPR GTGGRFAKKT NTNTDDSRKK  180
AGEKNNACPT QSPTSSNSDQ PEAWSDEYRT THQSEEMQSS AYKTREEVEC LGQQWNNISS  240
NHPSQARLAI K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716877.11e-109PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X1
RefseqXP_013716879.11e-109PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X3
RefseqXP_013716880.11e-109PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X3
RefseqXP_013720558.11e-109PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X1
RefseqXP_013720560.11e-109PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X3
RefseqXP_013720561.11e-109PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X3
SwissprotQ945M92e-97NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLW6D8R01e-109W6D8R0_BRANA; Transcription factor subunit NF-YA9A
STRINGBra001806.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-98nuclear factor Y, subunit A9