PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13657.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 423aa    MW: 47075.4 Da    PI: 4.2345
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13657.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573125.91.8e-39229325297
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdq 86 
                              +fqr+w+eeDei++LqG+id++++tg++p+dd +a+ye +k+sisf+v+k+q++eKir+LKkKf ++++k +k+g+ p+fsk+hd 
  Rsa1.0_13657.1_g00002.1 229 YFQRVWTEEDEITVLQGIIDYQNETGANPFDDKNALYELLKQSISFNVTKTQFSEKIRSLKKKFDNNREKeKKRGEAPAFSKPHDL 314
                              8*****************************************************************99997899************ PP

                   DUF573  87 kifelskkiWg 97 
                              ++f lsk +Wg
  Rsa1.0_13657.1_g00002.1 315 ETFRLSKFVWG 325
                              **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.1E-33230325IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MTMNLEPTSS SSSYEDDSSS SEEETDSPVL KASLPVTTAN SSSSEEEEET DSESETEPVH  60
DSKDGSKPKI TANSLSDSPV VKPPADSSNK VEAPMNTANS SSEEEETDSE SETEQEEVEA  120
VKPPPDSSSK VPVNSSSEEE EEETDSESET DPVETSSKLE TTEVEPDSPA VKPPTDSNKV  180
ETSQNPFVTK KRPIDETMDD GEAKRIKPVS GGDDDDKKIT VFQETKKNYF QRVWTEEDEI  240
TVLQGIIDYQ NETGANPFDD KNALYELLKQ SISFNVTKTQ FSEKIRSLKK KFDNNREKEK  300
KRGEAPAFSK PHDLETFRLS KFVWGGDGIM SNAIEVKPPV LKLVAPAAVK KQEFVSIVEP  360
LARFGVDDLF AKKGWSKLSL EDKKRLEVEW EALQLEELSF YARKSRFIHD AVTKMAEASK  420
QDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672034.13e-98PREDICTED: mediator-associated protein 1-like
TrEMBLA0A078EK262e-97A0A078EK26_BRANA; BnaC04g34550D protein
STRINGBra038583.1-P3e-96(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.14e-48DNA-binding storekeeper protein-related transcriptional regulator