PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13392.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 125aa    MW: 14797.3 Da    PI: 10.7652
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13392.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.26e-151050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +i n+s r++t+ kR+ g+lKK +E+ +LC++++  ii+s+
  Rsa1.0_13392.1_g00001.1 10 FIVNNSSRKTTYKKRKRGLLKKPHEIFTLCGINAGAIIYSP 50
                             799************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.923149IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-131051IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MTRRKVKLAF IVNNSSRKTT YKKRKRGLLK KPHEIFTLCG INAGAIIYSP YDPTPEVWPS  60
VEGMNQVITT FRNLPEMDRH NNMVNQQEFV QQRITKADKL LLKKKKHNMQ VNLTEDMYRY  120
LRLDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAFIVNNSSRKTTYKKRK
21631RKTTYKKRKRGLLKKP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_13392.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084922e-73AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458729.14e-67PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-38AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A078GRA31e-46A0A078GRA3_BRANA; BnaA05g31430D protein
TrEMBLA0A3P5ZG071e-46A0A3P5ZG07_BRACM; Uncharacterized protein
TrEMBLM4FIU31e-46M4FIU3_BRARP; Uncharacterized protein
STRINGBra041022.1-P2e-47(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-34AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]