PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_12537.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 224aa    MW: 24553.4 Da    PI: 9.6767
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_12537.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1021e-31472194122
                      TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssas 83 
                              ++++ +++h kv+gR RR+Rl+  caar+F+L++eLG+++ ++t++WLl+ a+p+i+ +tgt+ ++a+++      +a++ +  ++
  Rsa1.0_12537.1_g00001.1  47 QTKSAKDRHLKVEGRSRRIRLPPVCAARIFQLTRELGHKSEGETLQWLLRHAEPSIISATGTGIKPATDSvsqpppQAVDLNLDVG 132
                              67899*********************************************************777774444444333333333333 PP

                      TCP  84 nsssg.................................................kaaksaa.kskksqksaasalnlakesrakar 119
                               s+s+                                                 +  + ++    ++q  +++a  l++++++ ++
  Rsa1.0_12537.1_g00001.1 133 GSRSQlsnglwgnetgfgvgannrttgggldlncgtgflgfdfigssemgfennN--QMHQvGVLNQQMGQEQAKVLHHHHHEAQQ 216
                              3333355667778888888888888899999999999999999988888887532..22222222333333334555555554444 PP

                      TCP 120 ara 122
                              ++a
  Rsa1.0_12537.1_g00001.1 217 QNA 219
                              444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.1E-2550215IPR005333Transcription factor, TCP
PROSITE profilePS5136923.46351105IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDPKNPPNLS NPSDKKKKTE TEVKVVLNTV EGKRKWKPKD NEGREIQTKS AKDRHLKVEG  60
RSRRIRLPPV CAARIFQLTR ELGHKSEGET LQWLLRHAEP SIISATGTGI KPATDSVSQP  120
PPQAVDLNLD VGGSRSQLSN GLWGNETGFG VGANNRTTGG GLDLNCGTGF LGFDFIGSSE  180
MGFENNNQMH QVGVLNQQMG QEQAKVLHHH HHEAQQQNAD KQGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_12537.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480871.11e-143PREDICTED: transcription factor TCP6
SwissprotQ9FLM64e-63TCP6_ARATH; Transcription factor TCP6
TrEMBLA0A3P6CZ791e-113A0A3P6CZ79_BRACM; Uncharacterized protein
STRINGBra025528.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.12e-58TCP family protein
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]