PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_12047.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 179aa    MW: 20138.4 Da    PI: 8.6621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_12047.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-0974122455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR +iN+++  L++++P +   ++  +  a++L + ++Y++sLq
  Rsa1.0_12047.1_g00001.1  74 SHSLAERVRRGKINERLKCLQDIVPGC---YKVAMGMATMLDEIINYVQSLQ 122
                              8**************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1668139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-968126No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1570133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.03470121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-774122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-976127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGFIHTYTKI HDSDESSSRN DTKKRKTLTS SVSTSENSGT KNSYARKGRS KSREEEKERE  60
DVHVRVKRGQ ATDSHSLAER VRRGKINERL KCLQDIVPGC YKVAMGMATM LDEIINYVQS  120
LQNQVEFLST ELTAASSYYD FNSEADAVDS MQKAKAREAV EMGQGRDGSS VFHPSSWTL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_12047.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885851e-151AF488585.1 Arabidopsis thaliana clone bHLH050 putative bHLH transcription factor mRNA, partial sequence.
GenBankAK1187811e-151AK118781.1 Arabidopsis thaliana At1g73830 mRNA for putative bHLH transcription factor (bHLH050), complete cds, clone: RAFL21-11-M10.
GenBankBT0060551e-151BT006055.1 Arabidopsis thaliana clone U51368 putative helix-loop-helix DNA-binding protein (At1g73830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674822.12e-96transcription factor BEE 3-like
SwissprotQ8GWK73e-86BEE3_ARATH; Transcription factor BEE 3
TrEMBLM4CV677e-95M4CV67_BRARP; Uncharacterized protein
STRINGBra008113.1-P1e-95(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.16e-79BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]