PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10829.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 334aa    MW: 38196.9 Da    PI: 9.2101
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10829.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.42.5e-38832442133
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                              + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i+++t++                      
  Rsa1.0_10829.1_g00001.1  83 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKITSSlsnqfkhggeesqtrpaigsmh 168
                              5799************************************************************9998888888876666665432 PP

                      TCP  66 ..ssssasec..........eaesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertre 128
                                s     +           +       +s    +           + +    k+k  q ++    +l+k+ r++ar+ra++rt+e
  Rsa1.0_10829.1_g00001.1 169 tsS-----DLckigsmwkveD------GGS----NtnstetrenkvDGRLMRGKRKMLQPRTPILKKLSKDARERARERAKDRTKE 239
                              220.....2223332222211......222....022234455556333344455555666666799******************* PP

                      TCP 129 kmrik 133
                              km ++
  Rsa1.0_10829.1_g00001.1 240 KMLKR 244
                              **887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-4084242IPR005333Transcription factor, TCP
PROSITE profilePS5136931.72485143IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.075223240IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
APSSFSQFEF VPDFALLPYL HQQNNGHNDN KTTSDHHHPS LLPLNNSIGE SLAEPSETIT  60
THIEDSQRNS TFQDPKMNKV KKPSRTDRHS KIKTAKGTRD RRMRLSLDVA KELFGLQDML  120
GFDKASKTVE WLLTQAKPEI IKITSSLSNQ FKHGGEESQT RPAIGSMHTS SDLCKIGSMW  180
KVEDGGSNTN STETRENKVD GRLMRGKRKM LQPRTPILKK LSKDARERAR ERAKDRTKEK  240
MLKRISQVNI LDEEAHNHHD EIAKDNKSHV NCKSFEVAPC EEEIEQLLCK NDDFAVCNEF  300
VANKFSSSFP MPNHHRSKET ASSLDQIERR RFYD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_10829.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626114.10.0PREDICTED: transcription factor TCP18-like isoform X4
SwissprotA1YKT11e-141TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A078IV770.0A0A078IV77_BRANA; BnaCnng23770D protein
TrEMBLA0A3P6AJB60.0A0A3P6AJB6_BRAOL; Uncharacterized protein
STRINGBra001710.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-134TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]