PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_10134.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 595aa    MW: 64221.1 Da    PI: 6.2005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_10134.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-09273321355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_10134.1_g00001.1 273 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 321
                              58*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-17268340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.29E-11268325No hitNo description
PROSITE profilePS5088815.478270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17271338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6273321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDTSEKEEFS GEKRNDSNPA DWRVSGSNHV SAPPFGSYPT ENLITASCSP SQMMDSFGQT  60
LWYDPTNVQA VGYGGSSSSS CFRGGMDWSL PNLLPPKGNG LFLPNASSFL PPSMAQFPAD  120
SGFIERAARF SLFSDMVNQP LGSPESVGLF VQGQCPSSEV NVGGVAHNNV IRCSEQGSKP  180
NVSEDTQSSG QKGGETSSKG FDSKKRKRNR QSSEADQSQR SEEEAENNGG DKKEQSPNSP  240
GNKTNSGKQQ GKQASDPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC  300
NKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQMDF YLEGLLAKDV RELQLRGGSS  360
SATPFPTQNM SMVYPPLPHG FMQQQTLSSV GRTISSPLSP MNGGYKRQET NGWEGDLQNV  420
IHINYGAGDV PSDPEAAAAT EEEEAAGLSS DDRRVVAPLA PPPVQFSLIS LRLPDLGVVV  480
VVGGSLLEAF FRLCSGFFLP SLSSSLVVFA SVLCVSFFGS RGGSIVVGRL CFLVAFGCDG  540
RIPFGVVNFP ARGSRIGGFV PLHFSVEACE VNWFLFLLDG SLLVPVVRQG LFRSC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_10134.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3189370.0AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
GenBankAY1282990.0AY128299.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.
GenBankBT0022590.0BT002259.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446680.10.0PREDICTED: transcription factor bHLH49
RefseqXP_018446685.10.0PREDICTED: transcription factor bHLH49
RefseqXP_018446694.10.0PREDICTED: transcription factor bHLH49
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3N6QHI20.0A0A3N6QHI2_BRACR; Uncharacterized protein
STRINGBo2g062450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]