PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09702.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 241aa    MW: 25073 Da    PI: 10.8713
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09702.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.93.7e-3828181294
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++ s sss     
  Rsa1.0_09702.1_g00001.1  28 AVKKPPPKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStSSLSTSSSFT--- 110
                              79**************************************************************9999977743333333322... PP

                      TCP  87 sg....................................................................kaaksa 94 
                                                                                                    +    +
  Rsa1.0_09702.1_g00001.1 111 -LgkrgvregegevgaglgggggltvghtmgaslvsgggfwavparpdfgqvwsfagappemlfaqqqqpA----T 181
                              .0223455667777788888888888888888888888888888888888888876666666666533221....2 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.1783488IPR017887Transcription factor TCP subgroup
PfamPF036349.0E-3435195IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTSNDGSVPN GVIVEQTSSA VNKGTLNAVK KPPPKDRHSK VDGRGRRIRM PIICAARVFQ  60
LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST SSLSTSSSFT LGKRGVREGE  120
GEVGAGLGGG GGLTVGHTMG ASLVSGGGFW AVPARPDFGQ VWSFAGAPPE MLFAQQQQPA  180
TLFVRHQQQQ QQQQQASAAT AMGEASAARV GNYLPGHHLN LLASLSGGNT GSGRREGNDS  240
R
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_09702.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476155.11e-174PREDICTED: transcription factor TCP21-like
RefseqXP_018476156.11e-174PREDICTED: transcription factor TCP21-like
SwissprotQ9FTA21e-111TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A0D3B0A01e-118A0A0D3B0A0_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QFI31e-118A0A3N6QFI3_BRACR; Uncharacterized protein
TrEMBLA0A3P6AN881e-118A0A3P6AN88_BRAOL; Uncharacterized protein
STRINGBo3g004850.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.11e-44TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]