PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09229.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 401aa    MW: 45476 Da    PI: 5.8838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09229.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.7e-15211257455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h   Er+RR+++N++f +Lr+++P+       K +K++iL  +++Y+++Lq
  Rsa1.0_09229.1_g00001.1 211 NHALTERKRREKLNDRFMTLRSIIPST-----SKIDKVSILDDTIDYLQKLQ 257
                              7999**********************7.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.06207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.51E-15211261No hitNo description
SuperFamilySSF474591.02E-18211277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-18211273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-13211257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-17213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MFNSHPYGTI STRSDYQEIF DPLNSDKYIL GTEAFPTTST SGFEQELEDH DSFINGGSAS  60
QVQSWQFVGE ELNNCVHQPL NSSDCVSQTL VGTTGRVSCN PRKSRTQRLS QIQEQSNRLN  120
MDDDVHYQGV ISTIFKTTHQ LILGPQFQNF DKRSSFTRWR RSSLSAKTLG EKSQNMIKKI  180
IFEVPRMHQK ELLLPNTPED NMFKVGDETG NHALTERKRR EKLNDRFMTL RSIIPSTSKI  240
DKVSILDDTI DYLQKLQRRV QELESCREYT DTEMRMPTKR KKSEDEDERA SANCLNTKRK  300
ESDVNVGEDE PADTGYAGLT DNLRIGLFGN EVVIELRCAR REGILLEIMD VISDLNLDSH  360
SVQSSTGDGL LCLTVNCKHK GTKIATTGMI QEALQGVAWI C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215220ERKRRE
2216221RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688436.10.0PREDICTED: transcription factor EGL1
RefseqXP_013688437.10.0PREDICTED: transcription factor EGL1
SwissprotQ9CAD00.0EGL1_ARATH; Transcription factor EGL1
TrEMBLA0A078F5I30.0A0A078F5I3_BRANA; BnaC09g12820D protein
STRINGBra027796.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.30.0bHLH family protein