PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_09028.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 378aa    MW: 42727.7 Da    PI: 7.6422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_09028.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.45.4e-18250295454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               hn  ErrRRdriN+++ +L+el+P++     +K +Ka+iL +A++Y+ksL
  Rsa1.0_09028.1_g00002.1 250 VHNLSERRRRDRINERMKTLQELIPHC-----TKTDKASILDEAIDYMKSL 295
                              6**************************.....9****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-20244308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-20244302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088819.213246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-10249300No hitNo description
PfamPF000101.9E-15250295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-19252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDYQDWNFEK NYKLSNSRRS TRAQDELVEL LWRDGEVVLQ SQTNREQTQA QTEKYDHHQE  60
TLRSNNFLED QETVSWIQYP PDEDPFIAAD FSSHFFSTAN PLEKPATEIF KHDAGPDPPD  120
QVMPPPKFWL MDSSSGVKQL GKEQYSVVTV GPSHCGSNQP HNNLDVSMSH DRNKTVVERL  180
YHNAGSSSGG SSGCSFGKNI KEIASGQSIT TNRKRKIIMD TDESLSQSDA ILNKSNQRSG  240
STRRSRAAEV HNLSERRRRD RINERMKTLQ ELIPHCTKTD KASILDEAID YMKSLRLQVQ  300
VTWMGSRMAG AAVAPMVFPG VQPQMQSPVQ FPRFPVMDPS AIQNNPGLVC GNPVQTKFSP  360
SGLIDAWAYS HTCRPRLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254259ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142152.10.0PREDICTED: transcription factor PIF4-like isoform X1
SwissprotQ8W2F31e-163PIF4_ARATH; Transcription factor PIF4
TrEMBLA0A078GWP90.0A0A078GWP9_BRANA; BnaC01g40470D protein
STRINGBra037742.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.11e-160phytochrome interacting factor 4