PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08979.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 329aa    MW: 37382.8 Da    PI: 4.4654
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08979.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.5e-13661431698
                              EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               vlp ++ +++   ++ ++t +l+ ++g+ W+vk   + ++++ + +++GW++F  +n   ++Df++F++dg+++f  +v++fr
  Rsa1.0_08979.1_g00001.1  66 KVLPSDYRKDYP--TPLPQTAVLRKPEGNFWTVKW--KISQDEtISFEDGWSKFITDNAPLDRDFLLFSYDGSRTF--LVSIFR 143
                              477777776665..66899****************..555444599************************997666..***998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.1E-942145IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1566143IPR015300DNA-binding pseudobarrel domain
PfamPF023627.3E-1166143IPR003340B3 DNA binding domain
PROSITE profilePS5086311.58967145IPR003340B3 DNA binding domain
CDDcd100171.73E-967143No hitNo description
Gene3DG3DSA:2.40.330.109.5E-1567143IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
GVTDDFSFED FEKAKASPSS KLRHKQEALV VTKMVFTPYP DLLIIYNSLD VSLSQRLGLA  60
LFLTSKVLPS DYRKDYPTPL PQTAVLRKPE GNFWTVKWKI SQDETISFED GWSKFITDNA  120
PLDRDFLLFS YDGSRTFLVS IFRDGLPVKP KDPVNIQEIS DEDDDETAGD DDDDGDDQNM  180
IISLSLGSSD EDDVDTTGGE VNNAHGRSRR VTSSQRKRAE AIGDPQMYLD DPSNPFFIAL  240
STCGRTVLVF PKQVIKDYDL KFDGRIKFID GFGELEAKFG DRKDRLVVHK WKELYERNDA  300
TPEDVIICEI LREGDVVRSI KTHFLRNDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08979.1_g00001.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126820.11e-144PREDICTED: B3 domain-containing protein At5g57720-like
SwissprotQ9FHH11e-103Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A3P6A2J91e-143A0A3P6A2J9_BRACM; Uncharacterized protein
TrEMBLM4DV741e-143M4DV74_BRARP; Uncharacterized protein
STRINGBra020417.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.16e-97B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]