PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08919.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 199aa    MW: 21599.1 Da    PI: 9.1766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08919.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-07166192430
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                              +h+ +Er RR++iN ++  L+el+P +
  Rsa1.0_08919.1_g00002.1 166 SHSLAERARREKINARMKLLQELVPGC 192
                              8************************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-8160194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.67E-5160194No hitNo description
PROSITE profilePS5088811.23162199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-8165192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-5166192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDLTGGFGAR YDGGQEATGL ESLHLGDELR QLPPDGFTAL LELPPTQALK LLHFTDSPSS  60
SPQAAPIAPP SFASNLALME RPARFSTEHQ QNGTNLSGET TTSSSVKTEP AETNSSSQAV  120
NNRSGKRKDS DNKPKSSTKK KNKSSEEKEK LPYVHVRARR GQATDSHSLA ERARREKINA  180
RMKLLQELVP GCDKVCLSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885932e-67AF488593.1 Arabidopsis thaliana clone bHLH060 putative bHLH transcription factor mRNA, complete cds.
GenBankAK3527282e-67AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.
GenBankAY1397732e-67AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds.
GenBankBT0030372e-67BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461652.11e-143PREDICTED: transcription factor bHLH60-like isoform X1
RefseqXP_018461654.11e-144PREDICTED: transcription factor bHLH60-like isoform X3
SwissprotQ3EAI11e-71BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A078EBT41e-84A0A078EBT4_BRANA; BnaC06g16100D protein
STRINGBra003300.1-P9e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.24e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]