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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_07756.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 376aa MW: 43014.5 Da PI: 6.5175 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.8 | 8.7e-12 | 97 | 139 | 4 | 46 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k rr+++NReAAr+sR+RKka++++Lee +L++ ++L Rsa1.0_07756.1_g00002.1 97 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELE 139 7899**************************8888887776554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.3E-7 | 94 | 171 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.404 | 96 | 140 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.1E-9 | 96 | 140 | No hit | No description |
Pfam | PF00170 | 1.5E-8 | 97 | 139 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.91E-7 | 98 | 140 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 101 | 116 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.4E-30 | 180 | 254 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MMSSFSPTQL ASLRDMGIYE PFQQLVSWGN VYKSDINDHS PNTASSSVIQ VDTRVDDHNN 60 IIKSNYATSP HNQIEAEPSS NDHQDDDCDD DHGKIHDKMK RRLAQNREAA RKSRLRKKAY 120 VQQLEESRLK LSQLEQELEK VKQHGLRVSN SIPSGTIINT RIATFEMEYS HWLEEQSRRV 180 SELRIALQAH ISDIELRMLV ESCLNHYANL FRMKSDAAKA DVFYLISGMW RTSTERFFQW 240 IGGFRPSELL NVVMPYLQPL TDQQVLEVRN LQQSSQQAED ALSQGIEKLQ QSLVENIVVD 300 AVSMDYPPQM AAALENLQAL EGFVNQADHL RQQTLQQMAK ILTTRQAARG LLALGEYLHR 360 LRALSSLWAA RPREPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00247 | DAP | Transfer from AT1G77920 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_07756.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353384 | 0.0 | AK353384.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-N08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018452469.1 | 0.0 | PREDICTED: transcription factor TGA7 | ||||
Refseq | XP_018452470.1 | 0.0 | PREDICTED: transcription factor TGA7 | ||||
Swissprot | Q93ZE2 | 0.0 | TGA7_ARATH; Transcription factor TGA7 | ||||
TrEMBL | A0A0D3D1G4 | 0.0 | A0A0D3D1G4_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g121590.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3061 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77920.1 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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