PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07413.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 274aa    MW: 30376.7 Da    PI: 5.8506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07413.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.7e-052222581354
                              HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              R+++++ +  Lr+++P       + ++ a++L +Av+Y+ksL
  Rsa1.0_07413.1_g00001.1 222 RRKMKKMMGVLRRIVPGG-----EEMNTASVLDEAVQYLKSL 258
                              899*************95.....69***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.785209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.007216264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-5222263No hitNo description
Gene3DG3DSA:4.10.280.102.7E-6222265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-7222268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MCIVGNKKGN NRSLKEIGTF MMTTCFIANY QSVQVCQAEY FRQLLKPHGG HSLMQNNQYP  60
YFSDEMGDGN MNNVPSYATA SSFDALFPPC AKLPFHGVEL QPSAVCPKNF VVFHQTYDHR  120
SSQVMYHPEL TPRLVNSGLA STFQNEYVGQ QEEEVSSSSS HQEDPSEIDA LLSTDEDFED  180
DGDSEEVSST ARNSSYGYNN SSRRKQGLSG SASSCNNDGK GRRKMKKMMG VLRRIVPGGE  240
EMNTASVLDE AVQYLKSLKL EAQKLGVGHF SNQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202225RRKQGLSGSASSCNNDGKGRRKMK
2220228GRRKMKKMM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224556e-72AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBankAC0080306e-72AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence.
GenBankCP0026846e-72CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankAY0748436e-72AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBankAK3187026e-72AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13.
GenBankAK2303746e-72AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05.
GenBankAF3616076e-72AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593013.11e-119PREDICTED: transcription factor bHLH144-like
SwissprotQ9ASX93e-88BH144_ARATH; Transcription factor bHLH144
TrEMBLA0A0D3D5V81e-155A0A0D3D5V8_BRAOL; Uncharacterized protein
STRINGBra030184.1-P1e-117(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.29e-70bHLH family protein