PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07144.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 322aa    MW: 35720.1 Da    PI: 4.9959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07144.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20149198255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Rsa1.0_07144.1_g00001.1 149 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 198
                              59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.89E-36148208No hitNo description
SuperFamilySSF541712.09E-23149207IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32149207IPR001471AP2/ERF domain
SMARTSM003803.4E-39149212IPR001471AP2/ERF domain
PROSITE profilePS5103223.565149206IPR001471AP2/ERF domain
PfamPF008479.4E-15150198IPR001471AP2/ERF domain
PRINTSPR003672.9E-11150161IPR001471AP2/ERF domain
PRINTSPR003672.9E-11172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MADFFSSSHG GELMEALQPF YKSASTSASD SAFVSSNAAF ASTQNDPFSF SFYNPQPQNI  60
SSYSTTQSDY GSYPDIYPGS MTYPSSFDSE LQQQPDQNYQ PQFHYQNGST NTHQDNNYTL  120
HFDDPNNSDF LTQPYPVPSS GSVPKPTKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD  180
TAEEAALAYD RAAFKLRGDS ARLNFPALRH QTASSPSDFG EYYGPIQAAV DAKLEAILAE  240
PKNQPGKKET KSSKRAKATA PSSIEHSTPQ QQYGSGESDG SGSPASDMMA MEMCVETPVP  300
WNDNFMLGKC PSYEIDWASI LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22148206160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAPTransfer from AT1G36060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_07144.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489446.10.0PREDICTED: ethylene-responsive transcription factor ERF055
SwissprotQ9SKW51e-148ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLA0A078IDT30.0A0A078IDT3_BRANA; BnaAnng09570D protein
TrEMBLA0A397ZID80.0A0A397ZID8_BRACM; Uncharacterized protein
TrEMBLM4FH030.0M4FH03_BRARP; Uncharacterized protein
STRINGBra040381.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-122ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]