PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06344.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 327aa    MW: 34913.7 Da    PI: 6.4091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06344.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11138183555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  Rsa1.0_06344.1_g00003.1 138 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 183
                              99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.08E-11131187No hitNo description
SuperFamilySSF474591.96E-16131191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-16135190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-9138183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MREREAKERR QEEEMENGNG EGKGEFINQS NNNDYFLDSM SMLSSLPPCW DSSLPPPHPP  60
PPPQSLLHAL TVDASFPDQF HHTQANKPSS LTSLNTNESG GPSQDGLQGQ GTVSTTSAHV  120
ARQKPRVRAR RGQATDPHSI AERLRRERIA ERMKSLQELV PNTNKTDKAS MLDEIIEYVR  180
FLQLQVKVLS VSRLGGARAA GGPGFNGLTS EVGGRLNALS GPINGANGNG NATGSSNESL  240
RSTEQRVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAISS SSTASSHSRG ALFNPRSSVV  300
AAEETNVAVA AAEASTSMDD DVAASKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_06344.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722225.11e-169transcription factor bHLH82-like
SwissprotQ9LSQ31e-165BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A0D3EC941e-166A0A0D3EC94_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EJI31e-166A0A3P6EJI3_BRAOL; Uncharacterized protein
STRINGBo9g133640.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-83LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]