PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06286.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 476aa    MW: 53424.7 Da    PI: 5.0468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06286.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-14312358455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ Le A+ YIk+Lq
  Rsa1.0_06286.1_g00002.1 312 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLEDAISYIKELQ 358
                              799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-4746234IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.44E-18307367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.27E-16311362No hitNo description
PfamPF000104.9E-12312358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-18312367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-18314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNDLGWDEEE TSIANAVLGN SASDFLRTIS SSNQNLFLFT ETDDTLNKKL SSLVEWPNSE  60
NFSWNYSILW QQTVSRSGHQ VLGWGDGCCR EPNHSEESKL VSGLEEEEEM MRWQEMRRRV  120
LHKLQRVFGE SDEDNNYALS LENVTATETF FLASMYFFFN HGEGGPGRCF SEGRHVWWVS  180
DEVGYDYCFR SFMAKRAGIR TVVMVPTDAG VVELGSVWSL PENVELVRSV QGLFMRRVEP  240
SRVGGVHKLF GQELNSFDHN NKGYTSQGSD VKVQENANVV VAGGGGGACV VEEKRPKKRG  300
RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLEDA ISYIKELQEK  360
VKSIEAEGVR TVDSTEAVEI QAGEEEVVVR MISPLETHPA SRIIQAMRNS EVSVMESTLS  420
SAEDRVFHTF VVKSNNGSDP LTREKLIAAA GYPQSSLMQQ QQPLVPSHSS QVSGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-17432346192Transcription factor MYC3
4rqw_B2e-17432346192Transcription factor MYC3
4rs9_A2e-17432346192Transcription factor MYC3
4yz6_A2e-17432346192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293301KRPKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716903.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A0D3C6K30.0A0A0D3C6K3_BRAOL; Uncharacterized protein
STRINGBra039279.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-127ABA-inducible BHLH-type transcription factor