PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06196.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 498aa    MW: 57277.9 Da    PI: 5.417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06196.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13341386454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h  +ErrRR+++N++f +Lr+l+P       +K++K++iL  +++Y+++L
  Rsa1.0_06196.1_g00001.1 341 NHVVAERRRREKLNERFITLRSLVPFV-----TKMDKVSILGDTIDYVNHL 386
                              6999**********************8.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-2921163IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.396337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.60E-13340386No hitNo description
SuperFamilySSF474592.22E-18340403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-19341405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-11341386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-17343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDESSIIPVW KVTGAEEKEI QGLLKAVVQS VGWTYSLFWQ LCPQRRKLVW SSGFYNGAIK  60
TRKTTQPAEI TAEEAALERS QQLMELYQTL FAGESSMEAR ACTALSPEDL TDTEWFYVLC  120
LTYSFEPPSG MPGKAYARRK QVWMSGVNEV DSKIFSRAIS AKVKENEEFV EHIKSFFQNH  180
PKSNTKPALF EHSINEEHEE DEEVEEMTMS EEIRLGSPDD DDVSNQNLLS DFHIEAPNSL  240
DTQMDMMNLM EEGGSYSQTV STLLMSQLPN LLSDSVSTSS YVQSSFVSWR VENVKEHQQY  300
QREEKASSSS SSQWMLKHMI LRVPLLHENT KNKRVPREEL NHVVAERRRR EKLNERFITL  360
RSLVPFVTKM DKVSILGDTI DYVNHLCKRI HELESTHHEP NQKRMRIGKG RTWEEVEVSI  420
IESDVLLEMR CEYRDGLLLN ILQVLKELGI ETTAVHTAVN DHDFEAEIRA KVRGKKPTIA  480
EVKIAIHQII YLKINSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-11171636154Transcription factor MYC3
4rqw_B3e-11171636154Transcription factor MYC3
4rru_A3e-111716345193Transcription factor MYC3
4rs9_A3e-11171636154Transcription factor MYC3
4ywc_A3e-111716345193Transcription factor MYC3
4ywc_B3e-111716345193Transcription factor MYC3
4yz6_A3e-11171636154Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345350ERRRRE
2346351RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1920270.0EU192027.1 Brassica napus bHLH DNA-binding domain transcription factor (TT8.1) mRNA, complete cds.
GenBankKM4034520.0KM403452.1 Brassica rapa cultivar Zi He bHLH transcription factor (TT8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609428.10.0PREDICTED: transcription factor TT8
SwissprotQ9FT810.0TT8_ARATH; Transcription factor TT8
TrEMBLM4F9X30.0M4F9X3_BRARP; Uncharacterized protein
STRINGBra037887.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.10.0bHLH family protein