PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06117.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 68aa    MW: 7545.36 Da    PI: 10.1588
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06117.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA47.17.7e-152273358
                CBFB_NFYA 33 ksrkpylheSRhkhAlrRpRgsgGrF 58
                             ks+kpy+heSRh hA++RpRg+gGrF
  Rsa1.0_06117.1_g00001.1  2 KSKKPYMHESRHLHAINRPRGCGGRF 27
                             79***********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115220.424130IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-11227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MKSKKPYMHE SRHLHAINRP RGCGGRFLNA KKKNGGRKEE EEEATSDENT SEASSSLRSE  60
KSAMAPNG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN3976172e-74FN397617.1 Raphanus sativus Rfo genomic region from maintainer genotype.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013692496.12e-35PREDICTED: nuclear transcription factor Y subunit A-4
RefseqXP_013692495.12e-35PREDICTED: nuclear transcription factor Y subunit A-4
RefseqXP_013692494.12e-35PREDICTED: nuclear transcription factor Y subunit A-4
RefseqXP_013692493.12e-35PREDICTED: nuclear transcription factor Y subunit A-4
SwissprotQ8VY646e-34NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLA0A078D5732e-35A0A078D573_BRANA; BnaC04g10470D protein
STRINGBra005397.1-P9e-34(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.11e-18nuclear factor Y, subunit A4