PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_06065.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 179aa    MW: 20532 Da    PI: 10.2204
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_06065.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.47.6e-4260136278
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              Cqv++C++dl+eak+yhrrhkvCevh+ka++v+++g++qrfCqqCsrfhel efDe+krsCr+rLa+hnerrrk+++
  Rsa1.0_06065.1_g00002.1  60 CQVDRCTSDLKEAKQYHRRHKVCEVHAKASSVYLTGVKQRFCQQCSRFHELLEFDEAKRSCRKRLAGHNERRRKSSS 136
                              **************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375756.4E-581147IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.5E-3254121IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.80457134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-3859138IPR004333Transcription factor, SBP-box
PfamPF031106.8E-3260133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDGKKTQGKG YLKKKASVSY LVEEEMENDT DGEEEEKRKG VTDRFKGSTG SNDRGSSRLC  60
QVDRCTSDLK EAKQYHRRHK VCEVHAKASS VYLTGVKQRF CQQCSRFHEL LEFDEAKRSC  120
RKRLAGHNER RRKSSSESVG EGSGGRRGIT AQMIQNQERS RVDMTFPMSN TSFKRPQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-4547133184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534391e-115AK353439.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646324.11e-120PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
RefseqXP_013646323.11e-120PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
RefseqXP_013752442.11e-120PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
RefseqXP_013752441.11e-120PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
SwissprotQ9S7587e-82SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBLA0A0D3CQM41e-116A0A0D3CQM4_BRAOL; Squamosa promoter-binding-like protein
STRINGBra039656.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.25e-63squamosa promoter binding protein-like 4