PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05924.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 251aa    MW: 28716.6 Da    PI: 9.4629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05924.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-1472123154
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 
                              ++ +hn+ Er+RR++ Ns f+ Lr++lP++   +++K ls  ++  + v+YI +L
  Rsa1.0_05924.1_g00001.1  72 KKLNHNADERNRRKKTNSLFSSLRSCLPSS---YAPKkLSIPQTIYRSVQYIPEL 123
                              6789*************************7...55555**************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1363137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.06271123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-1072128No hitNo description
PfamPF000104.5E-1172123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1172147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-877129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRSLDPPLFP NCGRASTGEY ESYNLVRDNY KISTFLDFPV PKTYGVLHHQ TSLGASVSSE  60
GNGINNNSVV IKKLNHNADE RNRRKKTNSL FSSLRSCLPS SYAPKKLSIP QTIYRSVQYI  120
PELKEEVKNL IQKKEDLLLR ESGQRERYAK QQPKVVASYF STVFATKLRD NEVMVQISSS  180
KIRNFSIYNV LSGLEKDGFV LVDISSSSSR AKQLFYTLHL QVDEIDNYKL ICEDLSQRIL  240
YLYEECGNSF K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651482.11e-154PREDICTED: transcription factor ORG3-like
SwissprotQ9M1K11e-116ORG2_ARATH; Transcription factor ORG2
TrEMBLA0A078CN821e-154A0A078CN82_BRANA; BnaA07g06270D protein
STRINGBra014971.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-118bHLH family protein