PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05649.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 225aa    MW: 25284 Da    PI: 10.2151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05649.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08136176954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Rsa1.0_05649.1_g00002.1 136 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 176
                              699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15128188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-15131190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-6137176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-6150181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDNADILMNM MMQQMEKLPD HFSNPNPNTS SHNIMMPSES NSTYHPFFFN HTHLPVLNPT  60
ITHHHQPGLN FRYAPSTSSF LPEQRGGGGD NADMAAMREM IFRIAVMQPI HIDPESVKPP  120
KRKNVRISKD PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAI HYVKFLKKQV  180
QSLEEKHAVV NGGGMTAAPP VVGGKGCGTM RSDHHQMLGN AHILR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05649.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438373.11e-168PREDICTED: transcription factor HEC2-like
SwissprotQ9SND41e-106HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A078FTA11e-134A0A078FTA1_BRANA; BnaC08g21730D protein
TrEMBLA0A0D3DRW31e-134A0A0D3DRW3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FGF01e-134A0A3P6FGF0_BRAOL; Uncharacterized protein
STRINGBo8g079710.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]