PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05623.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 327aa    MW: 36319.6 Da    PI: 6.9591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05623.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.9e-09239281754
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++ r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Rsa1.0_05623.1_g00001.1 239 AAARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 281
                              567*******************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.307232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.16E-11235286No hitNo description
SuperFamilySSF474598.51E-14237296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-13238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6239281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-12240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEGLESVYAQ AIYGMTRASK IKEHQGSDLI WGGNDLSSCF MSDLGVTDVG NRPASIDPSS  60
LDCLLSSTTT NSNNTSTEDE EGISMLFSDC QTLWSFGGVS SAESENREIT TETATTTTKP  120
KSLKRNRGNR DETRSHFRLV HPPQEDSEKG NFKLVYDENQ SKSKKPRTEK DIGGGSSNIS  180
FRQHSTSLSE NVETDAEAIA QMKEMIYTAA AFRPVNLGLE IVEKPKRKNV KISTEPQTAA  240
ARQRRERISE KIRVLQTLVP GGTKMDTASM LDEAANYLKF LRAQVKALEN LRPKLDPTNL  300
SFSSPSSFPL FHPSFLPFQN PNQIHHH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246RQRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406283.10.0hypothetical protein EUTSA_v10022273mg
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLV4NMP90.0V4NMP9_EUTSA; Uncharacterized protein
STRINGBra001826.1-P0.0(Brassica rapa)
STRINGfgenesh2_kg.3__2354__AT3G21330.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-150bHLH family protein