PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05545.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 233aa    MW: 25081.3 Da    PI: 11.1072
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05545.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1271.9e-39341923118
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 
                              +kk   +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++   +      sas+ 
  Rsa1.0_05545.1_g00002.1  34 VKKPLAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSttsT---CTMSASSL 116
                              689999*********************************************************999997774332...33333322 PP

                      TCP  86 ssg...........................................kaaksaakskksqksaasalnlakesraka 118
                               ++                                           +a +++    ++qk++++al+++++ +++ 
  Rsa1.0_05545.1_g00002.1 117 DHKpllgsspfilgkrlranedsggaipagfwaaparpelgqvwsfAAGSQQVMLLQQQKQQEAALSVHQHRQQQG 192
                              2223556777888888888888899999****************98444444444444444444577776544333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3339187IPR005333Transcription factor, TCP
PROSITE profilePS5136927.593993IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSNNTNGVMI SNRDILERQR QQQQQQPSEG ALVVKKPLAK DRHTKVDGRG RRIRMPIICA  60
ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTTSTCT MSASSLDHKP  120
LLGSSPFILG KRLRANEDSG GAIPAGFWAA PARPELGQVW SFAAGSQQVM LLQQQKQQEA  180
ALSVHQHRQQ QGAMGEASAA RVGNYLQVPG HLNLLASLSG GAPGSGRREG DTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_05545.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436782.11e-171PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX23e-98TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1J3E1H41e-116A0A1J3E1H4_NOCCA; Transcription factor TCP7 (Fragment)
STRINGXP_006394596.11e-107(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-67TCP family protein