PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05396.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 409aa    MW: 46364.9 Da    PI: 6.4089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05396.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.73.6e-17259305455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  Er+RRdriN+++  L+el+P++      + +Ka+iL +A++Y+ksLq
  Rsa1.0_05396.1_g00002.1 259 VHNLSERKRRDRINERMKALQELIPHC-----NRTDKASILDEAIDYLKSLQ 305
                              6*************************8.....69*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-21253316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.584255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.16E-17258309No hitNo description
Gene3DG3DSA:4.10.280.107.7E-21259313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-14259305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-18261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEQLFPGWNL EDNFHVSTSK RSIRPEDELV ELFWRDGQVV LQSQVRREPS VQVQNHKHDQ  60
ALREPNNTFL VNQETVQKHN NTLQEDQETV SWIQYPSEDV IDPFESEFSS HFFSSIDHLD  120
GPDHPEKPQT IEDAIKHEAQ TMAPPKFRSS VVTIGPSHCG SSQSTNDHQV THPQVPMSDR  180
SKNAKERLDT SSGGLSGCSK ENESGRNVTI SRKRKHVMDT DQESVSQSDV SLMSTDDQVM  240
GNKSSQRSGS TRRSRAAEVH NLSERKRRDR INERMKALQE LIPHCNRTDK ASILDEAIDY  300
LKSLQMQLQV MWMGRGMAAA AAIPMMFPGV QSSQYINQMA MQSQMLQPQF PVMNRSVAQN  360
HPGLVCQNPV MQLQMQAQNH ILSEQLARYM GGFPPMPATT QVSEYVTVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116576.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF5
SwissprotQ84LH80.0PIF5_ARATH; Transcription factor PIF5
TrEMBLA0A078EY100.0A0A078EY10_BRANA; BnaA09g37540D protein
STRINGscaffold_503108.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.10.0phytochrome interacting factor 3-like 6