PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05139.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 347aa    MW: 39520.8 Da    PI: 4.3969
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05139.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.6e-1719114196
                              EEEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS
                       B3   1 ffkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 
                              ffk+l ++d +++    +  ++p + ++++  +  +s++++l+ ++g sW+vk+  +k+++  y+  +GW++Fv++n L e++ ++
  Rsa1.0_05139.1_g00003.1  19 FFKILRREDLSSEiiisCGRMIPHDIIRSIPDN-SSSFKMVLKVQWGSSWTVKI--SKNPSFhYMEDDGWNQFVNDNALGENEYLT 101
                              78888777777777777889**********766.5899****************..99999957777******************* PP

                              EEE-SSSEE..EEEE CS
                       B3  82 Fkldgrsefelvvkv 96 
                              F+++ ++ f  +v +
  Rsa1.0_05139.1_g00003.1 102 FTHEANMLF--NVNI 114
                              **9887877..5555 PP

2B338.91.6e-122293071599
                              -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                               l +pk f+e h+ k  e+k  +++ e   sW+v +    ++ +  +++GW++  ++ gL +gD+++Fkl++    e++vkv r+
  Rsa1.0_05139.1_g00003.1 229 FLGVPKAFMEMHMPK--ETKWFKIRPEGKDSWDVLY--LVTDVQSRFSAGWSRLSRELGLVVGDVCTFKLIK--PSEMLVKVSRH 307
                              4779********866..455788889999*******..555555669**********************997..45569999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1714118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-1715118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-1517115No hitNo description
SMARTSM010192.7E-1719118IPR003340B3 DNA binding domain
PROSITE profilePS5086311.43423118IPR003340B3 DNA binding domain
PfamPF023622.9E-1430112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-16213307IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.912215308IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-18215307IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-13216306No hitNo description
SMARTSM010192.6E-15218308IPR003340B3 DNA binding domain
PfamPF023629.7E-9229307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVRNSGFGQI MEEGDSPGFF KILRREDLSS EIIISCGRMI PHDIIRSIPD NSSSFKMVLK  60
VQWGSSWTVK ISKNPSFHYM EDDGWNQFVN DNALGENEYL TFTHEANMLF NVNIYEPDGM  120
EILRPRESAT IASSSGMNKG EQREGVYKHV KEETVSSSDS SYHSLKKAES AGSRLKKKNE  180
LNLGEKKAEE AEKPKKSTKK KKVEIDLEAG ISSLVPQFSI TIKKSHLVFL GVPKAFMEMH  240
MPKETKWFKI RPEGKDSWDV LYLVTDVQSR FSAGWSRLSR ELGLVVGDVC TFKLIKPSEM  300
LVKVSRHDED DIEEEDDEDE NDDDDDDDDE DDEDDADGYD DDDESED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126227.11e-163PREDICTED: B3 domain-containing protein At5g18000
SwissprotQ9FJG21e-134Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A078ESV31e-161A0A078ESV3_BRANA; BnaC02g07720D protein
STRINGfgenesh1_pg.C_scaffold_60014991e-135(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-127VERDANDI