PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05101.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 78aa    MW: 8810.03 Da    PI: 5.0201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05101.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-075471454
                             HHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
                      HLH 14 driNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54
                             d+iN+   +L +llP++   + +s+K+s + +L++++ YI++L
  Rsa1.0_05101.1_g00002.1  5 DQINDLVLQLHRLLPELGnnNRRSGKVSASKVLQETCTYIRNL 47
                             79**************666899*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.324147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-8569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-8565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-5547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MISEDQINDL VLQLHRLLPE LGNNNRRSGK VSASKVLQET CTYIRNLNKE VDDLSERLSQ  60
LLESTDSAQA ALIRSLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026862e-56CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankAL0497462e-56AL049746.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149879.12e-49PREDICTED: transcription factor PRE4
SwissprotF4JCN93e-44PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A078HHS22e-49A0A078HHS2_BRANA; BnaA06g17190D protein
TrEMBLM4DNN02e-49M4DNN0_BRARP; Uncharacterized protein
STRINGBra018117.1-P5e-49(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47710.12e-45BANQUO 3