PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04940.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 188aa    MW: 20954.4 Da    PI: 9.5418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04940.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-191261255
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a++ l+g
  Rsa1.0_04940.1_g00003.1 12 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 61
                             6********.**********883....5***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.4051269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-311269IPR001471AP2/ERF domain
SMARTSM003805.6E-351275IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-221270IPR016177DNA-binding domain
PfamPF008473.2E-131261IPR001471AP2/ERF domain
CDDcd000187.41E-291269No hitNo description
PRINTSPR003675.6E-111324IPR001471AP2/ERF domain
PRINTSPR003675.6E-113551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASTTTCARE VHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TFDTPEEAAL AYDGAARFLR  60
GIKAKTNFPP PLSLNLNLND FPPAPSATSA DNHHSQHHWF PAPLSITDNH HHHHHRVFLR  120
TGVLNDKTSD FSSTEAAPLY FANSPDVATS SSRVFEFPIM SSSPSSSSSA TARRGLAIDL  180
NEPPPLWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-21869163ATERF1
3gcc_A8e-21869163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04940.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0558831e-62AB055883.1 Arabidopsis thaliana AtERF12 gene for ERF domain protein12, complete cds.
GenBankAC0101551e-62AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankAY0997981e-62AY099798.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankBT0026041e-62BT002604.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankCP0026841e-62CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461132.11e-136PREDICTED: ethylene-responsive transcription factor 12-like
SwissprotQ94ID65e-87ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A0D3BIM41e-101A0A0D3BIM4_BRAOL; Uncharacterized protein
TrEMBLA0A397YMY41e-101A0A397YMY4_BRACM; Uncharacterized protein
TrEMBLM4D3281e-101M4D328_BRARP; Uncharacterized protein
STRINGBra010881.1-P1e-102(Brassica rapa)
STRINGBo3g143340.11e-102(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-72ERF domain protein 12