PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04924.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 107aa    MW: 12270.9 Da    PI: 5.7487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04924.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-0772100129
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk 29 
                              ++++h  +Er+RR ++ s f  Lr+llP 
  Rsa1.0_04924.1_g00004.1  72 KKMKHRDIERQRRLEVSSLFKSLRSLLPL 100
                              6899************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.74E-763101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.57E-669100No hitNo description
Gene3DG3DSA:4.10.280.102.6E-570101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.69371107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-572100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MDFVTSLFMP DLTDEDGLPF TDSFLSPLIS YQNHDVCNPI ADKNGVSKKK RSVCDTYGES  60
EANKGDDDRE SKKMKHRDIE RQRRLEVSSL FKSLRSLLPL QYIQVAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04924.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453987.13e-73PREDICTED: transcription factor bHLH125-like
SwissprotQ9LQ082e-46BH125_ARATH; Transcription factor bHLH125
TrEMBLA0A0D3E3T01e-56A0A0D3E3T0_BRAOL; Uncharacterized protein
STRINGBo9g028760.12e-57(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.19e-49bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]