PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04790.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 255aa    MW: 27273.2 Da    PI: 5.6544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04790.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.4e-051441831155
                              HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               R +r+ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Rsa1.0_04790.1_g00002.1 144 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 183
                              67788999*********999.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.89133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-11139193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-4142187No hitNo description
Gene3DG3DSA:4.10.280.105.6E-7143189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGDTSEDQDD RSFSELLMLS DGPPSSSDHH LINAGADGGE DSFGFVFSDP NGSRMLCFSG  60
ESQNDDKSLF LQPSLPSGVS VSGPSCTTNI CQNSNDACAE NQSTKSSTKK RNGSVNGETM  120
DHNRKPSKKC KQNQEKTSVG TAKVRKERLG ERIAALQQLV SPYGKTDAAS VLHEAMGYIK  180
FLQDQIQVLC SPYLINYSLD GGVVTGDVRA GKKVTDLRSR GLCLAPVSST VLVESSNGAD  240
FWSPATMGHT TSFTQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04790.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437822.10.0PREDICTED: transcription factor bHLH113-like
SwissprotQ9LT671e-133BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A398AR961e-162A0A398AR96_BRACM; Uncharacterized protein
STRINGBra038211.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-128bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]