PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04605.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 391aa    MW: 44326.8 Da    PI: 5.6133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04605.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11184235155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r+ah ++Er+RR+++N+ +  Lr+l+P +   + ++ + a++   ++e++++L+
  Rsa1.0_04605.1_g00002.1 184 QRMAHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASTIGGVIEFLSELE 235
                              79****************************...9****************99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.93E-11182239No hitNo description
SuperFamilySSF474596.28E-15183247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.367183234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-11184246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8184235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-7189240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.27E-5317381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDKDHSAPNF LSEYLCGNYD NNSSMIDHMF NRNLQQRKQS MPQQQQLSPS GFGATSTSDK  60
MSFADVMQFA DFCPMLPLNQ TRSQNDQETW MDPFYILKFP VFNGDHNQAH HLMSQEEGGC  120
EGNIGNVFLE EKDNQEDKND NNSVQIRFIG GEECRENKND TKKEVKSKRK RARTSKTSEE  180
VENQRMAHIA VERNRRKQMN EHLRVLRSLM PGSYVQRGDQ ASTIGGVIEF LSELEQLLQC  240
LESQKRRRIL GETSDMHGGD MTTAMITSSP ITSVAKPLII SGNVTDIEDG GGFHEETAEK  300
KSCLADVEVK LLGFDAMIKV LSRRRPGQLL MTIAALEDLH LSILHTNITT MEQTVLYSFN  360
VKNTSDTRFT AEDIASSIQE IFSFIHAYTT M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184195RMAHIAVERNRR
2244248KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0289611e-103BT028961.1 Arabidopsis thaliana At3g24140 mRNA, complete cds.
GenBankAB4936311e-103AB493631.1 Arabidopsis thaliana At3g24140 mRNA for hypothetical protein, partial cds, clone: RAAt3g24140.
GenBankAK2213241e-103AK221324.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL25-14-O10.
GenBankAF4886241e-103AF488624.1 Arabidopsis thaliana clone bHLH097 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102547.10.0PREDICTED: transcription factor FAMA
RefseqXP_013752046.10.0PREDICTED: transcription factor FAMA-like
RefseqXP_013752047.10.0PREDICTED: transcription factor FAMA-like
SwissprotQ56YJ80.0FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A078D7U40.0A0A078D7U4_BRANA; BnaC07g07390D protein
STRINGBra001929.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55482649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-175bHLH family protein