PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04515.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 315aa    MW: 35177.3 Da    PI: 4.6949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04515.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12132175755
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + ErrRR+r+++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  Rsa1.0_04515.1_g00002.1 132 ISERRRRSRMKDKLYALRSLVPNI-----TKMDKASIVGDAVLYVQELQ 175
                              67*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-16125192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-17127194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.69E-13127177No hitNo description
SMARTSM003531.8E-14131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9132175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MERRVNALSN LNDLEVYNFL VDPNFDQLIN FIRGDDQAIE NPPLDFDLGG HLQNNSCFID  60
QNQFVPTPVV DLFNELPDLG SNVTESFHSF EGESVKPDGD DNDYNDGDDS SATTTNNDGS  120
RKTKTDRSRT LISERRRRSR MKDKLYALRS LVPNITKMDK ASIVGDAVLY VQELQSQAKK  180
LKADIAGLEA SLNSTGGYQE PAPDAHKIQT FQSIKPPSKN IIEMDVIQVE EKGFYVRLVC  240
NKGVGVAPSL YKSLESLTSF QVQNSNLSSP SPDRYLLTYA LDGTCFKQSL NLPNLKLWIT  300
GSLLNQGFEF AKTFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634885.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
SwissprotQ0V7X40.0FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0D3C2H90.0A0A0D3C2H9_BRAOL; Uncharacterized protein
STRINGBra034392.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-173FER-like regulator of iron uptake