PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04413.1_g00003.1
Common NameICE1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 420aa    MW: 45586.3 Da    PI: 5.4954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04413.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11235277754
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Rsa1.0_04413.1_g00003.1 235 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 277
                              79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-17231301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9234277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15235290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-12235281No hitNo description
CDDcd048737.65E-7349409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVLDGNGGAV WLGGGGAGDR FHEEGEEEDG AAHFKPMLEG GDWFFNQPQD LHMLQSHHQD  60
FRFLGGGGGF FFNPNDNLLL DPFLAAANNS KSCLLNNVAN PFDNNNAFDF GSSDSCFLGG  120
YGSLSSSSVP EFLSARENNN NTSTPLESEG FGSRAKVLKP LEVLASSGAQ PTLFQKRAAM  180
RKLSEDGEMD ETGVEVSGLN YESDELNESC KVVQNGGGGG GNKGKKKGMP AKNLMAERRR  240
RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLKELLQR INDLHTEIES TPSGSLPPPT  300
SSSFHPLTPT PQTLSRRVKE ELCPSSLPSP KGQQARVEVR LREGRAVNIH MFCGRRPGLL  360
LATMKALDSL GLDVQQAVIS CFNGFALDVF RAEQCQEGQE ILPDQIKAVL LDTAGYAGMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224242KKKGMPAKNLMAERRRRKK
2236243ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8912870.0HQ891287.1 Raphanus sativus inducer of CBF expression 1 protein (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613374.10.0PREDICTED: transcription factor ICE1-like
RefseqXP_013613373.10.0PREDICTED: transcription factor ICE1-like
RefseqXP_013613372.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE20.0ICE1_ARATH; Transcription factor ICE1
TrEMBLF1DRM10.0F1DRM1_RAPSA; Inducer of CBF expression 1 protein
STRINGBra032947.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-160bHLH family protein
Publications ? help Back to Top
  1. Chinnusamy V, et al.
    ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis.
    Genes Dev., 2003. 17(8): p. 1043-54
    [PMID:12672693]