PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04358.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 460aa    MW: 49599.7 Da    PI: 7.0331
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04358.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.11.2e-41952732134
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s
  Rsa1.0_04358.1_g00002.1  95 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMS 180
                              57999***********************************************************7777766654455555555333 PP

                      TCP  87 sg...........................................kaaksaa.kskksqksaasalnlakesrakararare.rtr 127
                               +                                           +a +s+  ++ ++ ++++s+ln+++ ++++ +++++e ++ 
  Rsa1.0_04358.1_g00002.1 181 LPshyrnaastfspnnifspsllqqqqqqrsggggflhphhhlqgRATTSSLfPGIDNFTPTTSFLNFHNPTKQEGDQDSEElSSD 266
                              33344444455555555555555555555666788999999999988888888999999999999*****9999999999996666 PP

                      TCP 128 ekmrikn 134
                              +k r+++
  Rsa1.0_04358.1_g00002.1 267 KKRRLQT 273
                              6666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-40100277IPR005333Transcription factor, TCP
PROSITE profilePS5136927.505101155IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDGGDNVGGG DDHNRHLHHH HHRPTFPFQL LGKRDPEDNN QQQQQQQPSP SSSSSLFSLH  60
QHQQLSQTQP QPQQKPEPQK DLQEETAVVV AKRPPLKRAS TKDRHTKVDG RGRRIRMPAL  120
CAARVFQLTR ELGHKSDGET IEWLLQQAEP SVIAATGTGT IPANFTSLNI SLRSSGSSMS  180
LPSHYRNAAS TFSPNNIFSP SLLQQQQQQR SGGGGFLHPH HHLQGRATTS SLFPGIDNFT  240
PTTSFLNFHN PTKQEGDQDS EELSSDKKRR LQTASDIHHQ HEQIGGYTLQ SSNSGSTATT  300
AQIPGNFWMV AAAAAAAGGG NNNQTGGVSG GSGGGGEPVW TFPSINTAAA ALYRSSVSGV  360
SGGAVSSGLH FMNFAAPMAF LTGQQLATSS NHEINEDNNN NEGGRRSDGG DHHSTHERHH  420
HHQQQQHHNI LSGLNQYGRQ VSGESQASDS LGGGEEDPQD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04358.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533010.0AK353301.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441754.10.0PREDICTED: transcription factor TCP14
SwissprotQ93Z000.0TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A3N6RME30.0A0A3N6RME3_BRACR; Uncharacterized protein
STRINGBra018126.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.11e-141TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]