PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04356.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 339aa    MW: 38112.3 Da    PI: 5.0758
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04356.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.63.9e-38134222297
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                              +fqrlw+e+Dei++LqG+idfk++tg sp+dd++a y+ +kk isf+vsk+q+++K+r+LKkK+ +k+k        sf+k+hdqk
  Rsa1.0_04356.1_g00001.1 134 AFQRLWTEDDEISVLQGMIDFKNDTGNSPYDDTNAYYDHMKKFISFEVSKNQFMDKLRSLKKKYMGKEKP-------SFTKPHDQK 212
                              69**************************************************************998776.......********* PP

                   DUF573  88 ifelskkiWg 97 
                              +f l+k iWg
  Rsa1.0_04356.1_g00001.1 213 SFTLCKFIWG 222
                              *********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-30135222IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MNKKRNPLEN PPAASSSDDD EVVDSSAGEE EEHEDDDDAS SSEEEEEDQP KPPSSSAVTI  60
PGKTSDSGSE TETDSDSDTE QPPNQRSGKG ILAKDKSPPP LPKSGTKRPS EETSRETNSK  120
REKKTGEDSK KPAAFQRLWT EDDEISVLQG MIDFKNDTGN SPYDDTNAYY DHMKKFISFE  180
VSKNQFMDKL RSLKKKYMGK EKPSFTKPHD QKSFTLCKFI WGPDGMCLET AVKSNGVSKK  240
KTNSVKQDPS SPNVDDMRVL VHESDWFERS FLVRGIAGFG VDEHFVKQSW RLVPVETKKK  300
VEEKVKMLQA KEIEFVLHKT QILHEVTSMI AEASKNKPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631626.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A0D3BVI20.0A0A0D3BVI2_BRAOL; Uncharacterized protein
STRINGBra031402.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-90DNA-binding storekeeper protein-related transcriptional regulator