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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_04356.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GeBP | ||||||||
Protein Properties | Length: 339aa MW: 38112.3 Da PI: 5.0758 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 121.6 | 3.9e-38 | 134 | 222 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 +fqrlw+e+Dei++LqG+idfk++tg sp+dd++a y+ +kk isf+vsk+q+++K+r+LKkK+ +k+k sf+k+hdqk Rsa1.0_04356.1_g00001.1 134 AFQRLWTEDDEISVLQGMIDFKNDTGNSPYDDTNAYYDHMKKFISFEVSKNQFMDKLRSLKKKYMGKEKP-------SFTKPHDQK 212 69**************************************************************998776.......********* PP DUF573 88 ifelskkiWg 97 +f l+k iWg Rsa1.0_04356.1_g00001.1 213 SFTLCKFIWG 222 *********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.4E-30 | 135 | 222 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNKKRNPLEN PPAASSSDDD EVVDSSAGEE EEHEDDDDAS SSEEEEEDQP KPPSSSAVTI 60 PGKTSDSGSE TETDSDSDTE QPPNQRSGKG ILAKDKSPPP LPKSGTKRPS EETSRETNSK 120 REKKTGEDSK KPAAFQRLWT EDDEISVLQG MIDFKNDTGN SPYDDTNAYY DHMKKFISFE 180 VSKNQFMDKL RSLKKKYMGK EKPSFTKPHD QKSFTLCKFI WGPDGMCLET AVKSNGVSKK 240 KTNSVKQDPS SPNVDDMRVL VHESDWFERS FLVRGIAGFG VDEHFVKQSW RLVPVETKKK 300 VEEKVKMLQA KEIEFVLHKT QILHEVTSMI AEASKNKPL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631626.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A0D3BVI2 | 0.0 | A0A0D3BVI2_BRAOL; Uncharacterized protein | ||||
STRING | Bra031402.1-P | 1e-150 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 1e-90 | DNA-binding storekeeper protein-related transcriptional regulator |