PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04353.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 299aa    MW: 34002 Da    PI: 9.7533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04353.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-1819111196
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                              ffkvl ++d +++ +  +p +f+++++ + e s++++l+ ++g sW++kl  +k+++   y+ ++GW +F ++ngL + + ++F++
  Rsa1.0_04353.1_g00002.1  19 FFKVLRKEDLSSQTMREIPQEFLKSISAN-EFSFKMVLKLPWGSSWRIKL--SKSQSFfyYMEKNGWDQFLSDNGLGDDELLTFTH 101
                              99************************877.699*****************..888777878888********************** PP

                              -SSSEE..EEEE CS
                       B3  85 dgrsefelvvkv 96 
                              +g+++f  +v++
  Rsa1.0_04353.1_g00002.1 102 KGNMCF--NVTI 111
                              ******..6555 PP

2B353.35.1e-17211288487
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              + ++s+vl +g   +pk+fae+h+    e++  t+ d++g +sWev + ++k ++   +++GW + vk+ gL++gD+++F+l++ 
  Rsa1.0_04353.1_g00002.1 211 TIKKSYVLFLG---IPKRFAERHMP--MEETVFTIHDSKGkKSWEVMYVVSKIQS--RFSRGWPRLVKDFGLEVGDVCTFQLIKP 288
                              55667777665...*********73..345678999988879******5555555..599*********************9873 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2014119IPR015300DNA-binding pseudobarrel domain
CDDcd100175.25E-1917112No hitNo description
SMARTSM010194.7E-2019115IPR003340B3 DNA binding domain
PROSITE profilePS5086313.04219115IPR003340B3 DNA binding domain
PfamPF023625.3E-1619111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-20202295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-21202295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.816205299IPR003340B3 DNA binding domain
CDDcd100176.79E-18206289No hitNo description
SMARTSM010192.3E-16208299IPR003340B3 DNA binding domain
PfamPF023629.5E-15211288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGTNSCFGMI MEEGNNPGFF KVLRKEDLSS QTMREIPQEF LKSISANEFS FKMVLKLPWG  60
SSWRIKLSKS QSFFYYMEKN GWDQFLSDNG LGDDELLTFT HKGNMCFNVT IYQINCLEML  120
GPTRSATIAS SSGNKREQGR ESLSASSYPV SETAESTVGG RLRKKRELIN LGKKQVKEAE  180
KSNKSKKRKM DTNSDDSEAG TSSHVPEFTL TIKKSYVLFL GIPKRFAERH MPMEETVFTI  240
HDSKGKKSWE VMYVVSKIQS RFSRGWPRLV KDFGLEVGDV CTFQLIKPTE MILSVSNSM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121019.10.0PREDICTED: B3 domain-containing protein At5g18090
SwissprotQ9FK611e-112Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLA0A078HJ490.0A0A078HJ49_BRANA; BnaA10g16730D protein
STRINGBra002132.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-113B3 family protein