PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04134.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 255aa    MW: 28319.8 Da    PI: 8.1187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04134.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-1365111354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r+h  +E+rRRdriNs ++ Lr+l+P++      Kl+Ka+ L  ++e +k+L
  Rsa1.0_04134.1_g00005.1  65 RSHRLAEKRRRDRINSHLSALRKLVPNS-----DKLDKAALLATVIEQVKEL 111
                              68*************************8.....7*************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04662111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1364117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-1265113No hitNo description
Gene3DG3DSA:4.10.280.107.8E-1465116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1065111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1168117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.61E-4146221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MENSYESAVK WSDSNSPYNM LSCSLLQSDS DLSRFNLGFS SSSSSGNFQA DEFVGGIEKG  60
ELVSRSHRLA EKRRRDRINS HLSALRKLVP NSDKLDKAAL LATVIEQVKE LKQTATQSPT  120
FQDLPTEADE VIVQPETISN DFEPDTIIFK ASFCCEDQPE AISEIIRVLT KFQLETLQAE  180
IICVGGRMRI NFVLKDSNRK GTTTSMAASA KSLKQALCAA LNRIASSSSS SSTSSVCRIR  240
SKRQRWFLSS HYSQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04134.1_g00005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325721e-167AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477937.10.0PREDICTED: transcription factor bHLH51-like
SwissprotQ9XEF01e-133BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A0D3C5C31e-159A0A0D3C5C3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D8M51e-159A0A3P6D8M5_BRAOL; Uncharacterized protein
STRINGBo4g188890.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-126bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]