PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04103.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 493aa    MW: 54456.2 Da    PI: 5.3834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04103.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11324369454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er RR+++N++f  Lr  +P+       K++Ka+ L  A+ YI++L
  Rsa1.0_04103.1_g00001.1 324 NHVEAERLRREKLNQRFYALRATVPNV-----SKMDKASLLGDAICYINEL 369
                              799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4439206IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.279320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16323390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-12323370No hitNo description
PfamPF000106.7E-9324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15324390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDSSNTNVTA SMIDALMSSP SSSFWPPLSP ANPSPDIALQ KRLQAVLNGT HEAWTYAIFW  60
TPSYYDYSGE SVVKWGDGIY KGQEADKTRR RRPRRTTMIS DEALPMVYDE NDVEVSDTEW  120
FYVVSMAASF GSETGLPGKA FATYKPVWVT GSDQILGLGC DRAKQGGASG LRTIVCIPLD  180
NGVLELGSTV EIQQNSDLMN KIRVVFSFEG TRDFSGDPSS NSFPLFSTQL ENGGGSSTVT  240
VNANRYPNPV YPQTVNFATE EALHSPNRSY PGQMQNDDGE LLHVVEDMDG SDHSDIVAAT  300
VARENMQKKK RGRKLANGRK EPLNHVEAER LRREKLNQRF YALRATVPNV SKMDKASLLG  360
DAICYINELK LRAENAESEK NAIQIELNKL REEIAGRNAT SSVPRGGQNA SEIETASIDV  420
KVFGCDVMVR LESSKTNHPA ARLMSAFMDL DVELNHASIS VIHDLMVQQA TVKMGSRMYT  480
QEQLQAMLVS KIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-40382088194Transcription factor MYC3
4rqw_B1e-40382088194Transcription factor MYC3
4rs9_A1e-40382088194Transcription factor MYC3
4yz6_A1e-40382088194Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614723.10.0PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK71e-162BH028_ARATH; Transcription factor bHLH28
TrEMBLA0A0D2ZTS50.0A0A0D2ZTS5_BRAOL; Uncharacterized protein
STRINGBra017523.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139531624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-153NACL-inducible gene 1