PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04103.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 493aa    MW: 54456.2 Da    PI: 5.3834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04103.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11324369454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er RR+++N++f  Lr  +P+       K++Ka+ L  A+ YI++L
  Rsa1.0_04103.1_g00001.1 324 NHVEAERLRREKLNQRFYALRATVPNV-----SKMDKASLLGDAICYINEL 369
                              799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4439206IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.279320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16323390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-12323370No hitNo description
PfamPF000106.7E-9324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15324390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDSSNTNVTA SMIDALMSSP SSSFWPPLSP ANPSPDIALQ KRLQAVLNGT HEAWTYAIFW  60
TPSYYDYSGE SVVKWGDGIY KGQEADKTRR RRPRRTTMIS DEALPMVYDE NDVEVSDTEW  120
FYVVSMAASF GSETGLPGKA FATYKPVWVT GSDQILGLGC DRAKQGGASG LRTIVCIPLD  180
NGVLELGSTV EIQQNSDLMN KIRVVFSFEG TRDFSGDPSS NSFPLFSTQL ENGGGSSTVT  240
VNANRYPNPV YPQTVNFATE EALHSPNRSY PGQMQNDDGE LLHVVEDMDG SDHSDIVAAT  300
VARENMQKKK RGRKLANGRK EPLNHVEAER LRREKLNQRF YALRATVPNV SKMDKASLLG  360
DAICYINELK LRAENAESEK NAIQIELNKL REEIAGRNAT SSVPRGGQNA SEIETASIDV  420
KVFGCDVMVR LESSKTNHPA ARLMSAFMDL DVELNHASIS VIHDLMVQQA TVKMGSRMYT  480
QEQLQAMLVS KIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-40382088194Transcription factor MYC3
4rqw_B2e-40382088194Transcription factor MYC3
4rs9_A2e-40382088194Transcription factor MYC3
4yz6_A2e-40382088194Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_04103.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455076.10.0PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK71e-160BH028_ARATH; Transcription factor bHLH28
TrEMBLA0A3P6EGM80.0A0A3P6EGM8_BRAOL; Uncharacterized protein
STRINGBo01130s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139531624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-153NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  5. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]